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Currently displaying 221 - 240 of 2486 publications

Structural commonalities determined by physicochemical principles in the complex polymorphism of the amyloid state of proteins.

S Errico, G Fani, S Ventura, J Schymkowitz, F Rousseau, A Trovato, M Vendruscolo, F Bemporad, F Chiti

Biochem J

(2025)

482

(doi: 10.1042/bcj20240602)

Transient interactions between the fuzzy coat and the cross-β core of brain-derived Aβ42 filaments

M Milanesi, ZF Brotzakis, M Vendruscolo

Science advances

(2025)

eadr7008

(doi: 10.1126/sciadv.adr7008)

Transforming an ATP-dependent enzyme into a dissipative, self-assembling system.

Y Li, J Zhu, Z Zhang, J Wei, F Wang, G Meisl, TPJ Knowles, EH Egelman, FA Tezcan

Nature chemical biology

(2025)

883

(doi: 10.1038/s41589-024-01811-1)

Prediction of protein biophysical traits from limited data: a case study on nanobody thermostability through NanoMelt

A Ramon, M Ni, O Predeina, R Gaffey, P Kunz, S Onuoha, P Sormanni

mAbs

(2025)

2442750

(doi: 10.1080/19420862.2024.2442750)

Digestibility and enteric release achieved with microencapsulates made from emulsion-templated plant proteins

LW Browning, H Wang, JW Taylor, P Wilde, M Rodriguez-Garcia, LAM Holland, TPJ Knowles

Sustainable Food Technology

(2025)

689

(doi: 10.1039/d4fb00375f)

Estimation of Ligand Binding Free Energy Using Multi-eGO.

B Stegani, E Scalone, FB Toplek, T Löhr, S Gianni, M Vendruscolo, R Capelli, C Camilloni

Journal of chemical information and modeling

(2024)

351

(doi: 10.1021/acs.jcim.4c01545)

G3BP-driven RNP granules promote inhibitory RNA-RNA interactions resolved by DDX3X to regulate mRNA translatability.

IREA Trussina, A Hartmann, C Desroches Altamirano, J Natarajan, CM Fischer, M Aleksejczuk, H Ausserwöger, TPJ Knowles, M Schlierf, TM Franzmann, S Alberti

Molecular cell

(2024)

585

(doi: 10.1016/j.molcel.2024.11.039)

Ultrasensitive Protein Aggregate Quantification Assays for Neurodegenerative Diseases on the Simoa Platform

D Böken, Z Xia, JYL Lam, E Fertan, Y Wu, EA English, J Konc, F Layburn, GJL Bernardes, H Zetterberg, MR Cheetham, D Klenerman

Anal Chem

(2024)

290

(doi: 10.1021/acs.analchem.4c04188)

Liquid–liquid phase separation in hepatocellular carcinoma

J Xu, W Liu, Y Yao, TPJ Knowles, Z-G Zhang, Y-L Zhang

Frontiers in cell and developmental biology

(2024)

1454587

(doi: 10.3389/fcell.2024.1454587)

In vivo hyperphosphorylation of tau is associated with synaptic loss and behavioral abnormalities in the absence of tau seeds

N Watamura, MS Foiani, S Bez, M Bourdenx, A Santambrogio, C Frodsham, E Camporesi, G Brinkmalm, H Zetterberg, S Patel, N Kamano, M Takahashi, J Rueda-Carrasco, L Katsouri, S Fowler, E Turkes, S Hashimoto, H Sasaguri, T Saito, AS Islam, S Benner, T Endo, K Kobayashi, C Ishida, M Vendruscolo, M Yamada, KE Duff, TC Saido

Nat Neurosci

(2024)

293

(doi: 10.1038/s41593-024-01829-7)

Proteostasis Signatures in Human Diseases

CM Lim, M Vendruscolo

(2024)

(doi: 10.1101/2024.12.23.630032)

Tau accumulation patterns in PSP constrain mechanisms and quantify cell-to-cell and cell-autonomous aggregation rates

S-H Huang, A Quaegebeur, T Pansuwan, T Rittman, R Wang, TP Knowles, JB Rowe, D Klenerman, G Meisl

(2024)

(doi: 10.1101/2024.12.14.24318991)

Immuno-moodulin is Differentially Expressed in T Cells and Plasma in Obsessive-Compulsive Disorder Patients

IA Blacksell, M Vismara, CM Lim, B Dell’Osso, S Pallanti, E Hollander, M Vendruscolo, C D’Addario, D Cooper, F D’Acquisto

(2024)

(doi: 10.1101/2024.12.16.628685)

Hierarchical Plant Protein Microcapsules for Hydrophilic and Hydrophobic Cargo Molecules

N-D Dinh, M Rodriguez-Garcia, Z Toprakcioglu, Y Shen, T Knowles

(2024)

(doi: 10.48550/arxiv.2501.01962)

Estimation of ligand binding free energy using multi-eGO.

B Stegani, E Scalone, F Bacic Toplek, T Lohr, S Gianni, M Vendruscolo, R Capelli, C Camilloni

(2024)

(doi: 10.26434/chemrxiv-2024-jcmgc-v2)

PLUMED Tutorials: a collaborative, community-driven learning ecosystem

GA Tribello, M Bonomi, G Bussi, C Camilloni, BI Armstrong, A Arsiccio, S Aureli, F Ballabio, M Bernetti, L Bonati, SGH Brookes, ZF Brotzakis, R Capelli, M Ceriotti, K-T Chan, P Cossio, S Dasetty, D Donadio, B Ensing, AL Ferguson, G Fraux, JD Gale, FL Gervasio, T Giorgino, NSM Herringer, GM Hocky, SE Hoff, M Invernizzi, O Languin-Cattöen, V Leone, V Limongelli, O Lopez-Acevedo, F Marinelli, PF Martinez, M Masetti, S Mehdi, A Michaelides, MH Murtada, M Parrinello, PM Piaggi, A Pietropaolo, F Pietrucci, S Pipolo, C Pritchard, P Raiteri, S Raniolo, D Rapetti, V Rizzi, J Rydzewski, M Salvalaglio, C Schran, A Seal, AS Zadeh, TFD Silva, V Spiwok, G Stirnemann, D Sucerquia, P Tiwary, O Valsson, M Vendruscolo, GA Voth, AD White, J Wu

(2024)

Detecting and Tracking β-Amyloid Oligomeric Forms and Dynamics In Vitro by a High-Sensitivity Fluorescent-Based Assay

Y Zhao, O Brener, E Andrzejewska, J Wei, C Reiß, O Tietz, TPJ Knowles, FI Aigbirhio

ACS chemical neuroscience

(2024)

4383

(doi: 10.1021/acschemneuro.4c00312)

Language Models for Molecular Dynamics

MH Murtada, ZF Brotzakis, M Vendruscolo

(2024)

(doi: 10.1101/2024.11.25.625337)

Extracellular phase separation mediates storage and release of thyroglobulin in the thyroid follicular lumen

T Knowles, Y Yao, N Erkamp, T Sneideris, X Yang, R Scrutton, M Schneider, C Fischer, E Schoenmakers, N Schoenmakers

(2024)

(doi: 10.21203/rs.3.rs-5139555/v1)

Assessment of fine-tuned large language models for real-world chemistry and material science applications †

J Van Herck, MV Gil, KM Jablonka, A Abrudan, AS Anker, M Asgari, B Blaiszik, A Buffo, L Choudhury, C Corminboeuf, H Daglar, AM Elahi, IT Foster, S Garcia, M Garvin, G Godin, LL Good, J Gu, N Xiao Hu, X Jin, T Junkers, S Keskin, TPJ Knowles, R Laplaza, M Lessona, S Majumdar, H Mashhadimoslem, RD McIntosh, SM Moosavi, B Mouriño, F Nerli, C Pevida, N Poudineh, M Rajabi-Kochi, KL Saar, F Hooriabad Saboor, M Sagharichiha, KJ Schmidt, J Shi, E Simone, D Svatunek, M Taddei, I Tetko, D Tolnai, S Vahdatifar, J Whitmer, DCF Wieland, R Willumeit-Römer, A Züttel, B Smit

Chemical Science

(2024)

670

(doi: 10.1039/d4sc04401k)

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