Research Associate

Publications

Determining protein complex structures based on a bayesian model of in Vivo Förster Resonance Energy Transfer (FRET) Data
M Bonomi, R Pellarin, SJ Kim, D Russel, BA Sundin, M Riffle, D Jaschob, R Ramsden, TN Davis, EGD Muller, A Sali
Molecular & Cellular Proteomics
(2014)
13
Elucidating the mechanism of substrate recognition by the bacterial Hsp90 molecular chaperone
TO Street, X Zeng, R Pellarin, M Bonomi, A Sali, MJS Kelly, F Chu, DA Agard
Journal of Molecular Biology
(2014)
426
The Free Energy Profile of Tubulin Straight-Bent Conformational Changes, with Implications for Microtubule Assembly and Drug Discovery
LX Peng, MT Hsu, M Bonomi, DA Agard, MP Jacobson
PLoS computational biology
(2014)
10
PLUMED 2: New feathers for an old bird
GA Tribello, M Bonomi, D Branduardi, C Camilloni, G Bussi
Computer Physics Communications
(2014)
185
Modeling of proteins and their assemblies with the integrative modeling platform
B Webb, K Lasker, J Velázquez-Muriel, D Schneidman-Duhovny, R Pellarin, M Bonomi, C Greenberg, B Raveh, E Tjioe, D Russel, A Sali
Methods in Molecular Biology
(2014)
1091
Free-energy landscape of protein oligomerization from atomistic simulations
A Barducci, M Bonomi, MK Prakash, M Parrinello
Proceedings of the National Academy of Sciences
(2013)
110
Structural basis for alternating access of a eukaryotic calcium/proton exchanger
AB Waight, BP Pedersen, A Schlessinger, M Bonomi, BH Chau, Z Roe-Zurz, AJ Risenmay, A Sali, RM Stroud
Nature
(2013)
499
Funnel metadynamics as accurate binding free-energy method.
V Limongelli, M Bonomi, M Parrinello
Proceedings of the National Academy of Sciences of the United States of America
(2013)
110
Crystal structure of a eukaryotic phosphate transporter.
BP Pedersen, H Kumar, AB Waight, AJ Risenmay, Z Roe-Zurz, BH Chau, A Schlessinger, M Bonomi, W Harries, A Sali, AK Johri, RM Stroud
Nature
(2013)
496
High Selectivity of the γ-Aminobutyric Acid Transporter 2 (GAT-2, SLC6A13) Revealed by Structure-based Approach
A Schlessinger, MB Wittwer, A Dahlin, N Khuri, M Bonomi, H Fan, KM Giacomini, A Sali
J Biol Chem
(2012)
287

Postdoctoral researcher