Research Associate

Publications

Metainference: A Bayesian inference method for heterogeneous systems.
M Bonomi, C Camilloni, A Cavalli, M Vendruscolo
Science Advances
(2016)
2
The molecular architecture of the Dam1 kinetochore complex is defined by cross-linking based structural modelling
A Zelter, M Bonomi, JO Kim, NT Umbreit, MR Hoopmann, R Johnson, M Riffle, D Jaschob, MJ MacCoss, RL Moritz, TN Davis
Nature Communications
(2015)
6
Efficient Sampling of High-Dimensional Free-Energy Landscapes with Parallel Bias Metadynamics
J Pfaendtner, M Bonomi
J Chem Theory Comput
(2015)
11
Ligand Discovery for the Alanine-Serine-Cysteine Transporter (ASCT2, SLC1A5) from Homology Modeling and Virtual Screening
C Colas, C Grewer, NJ Otte, A Gameiro, T Albers, K Singh, H Shere, M Bonomi, J Holst, A Schlessinger
PLOS Computational Biology
(2015)
11
Specific Ion Binding at Phospholipid Membrane Surfaces.
J Yang, C Calero, M Bonomi, J Martí
J Chem Theory Comput
(2015)
11
Structural model of the bilitranslocase transmembrane domain supported by NMR and FRET data
A Roy Choudhury, E Sikorska, J van den Boom, P Bayer, Ł Popenda, K Szutkowski, S Jurga, M Bonomi, A Sali, I Zhukov, S Passamonti, M Novič
PloS one
(2015)
10
The molecular architecture of the Dam1 kinetochore complex is defined by cross-linking based structural modeling
A Zelter, M Bonomi, J Kim, NT Umbreit, MR Hoopman, R Johnson, ME Riffle, D Jaschob, M MacCoss, RL Moritz, TN Davis
MOLECULAR BIOLOGY OF THE CELL
(2015)
26
Accuracy of current all-atom force-fields in modeling protein disordered states
F Palazzesi, MK Prakash, M Bonomi, A Barducci
Journal of Chemical Theory and Computation
(2014)
11
Tackling sampling challenges in biomolecular simulations.
A Barducci, J Pfaendtner, M Bonomi
Methods in molecular biology (Clifton, N.J.)
(2014)
1215
Cys-Scanning disulfide crosslinking and bayesian modeling probe the transmembrane signaling mechanism of the histidine kinase, PhoQ
KS Molnar, M Bonomi, R Pellarin, GD Clinthorne, G Gonzalez, SD Goldberg, M Goulian, A Sali, WF Degrado
Structure
(2014)
22

Postdoctoral researcher