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Centre for Misfolding Diseases

Dr Predrag Kukic

Research Associate

 

Research Interests

Computational Chemistry, Molecular Dynamics, Soft matter, Biophysics, NMR, Bioinformatics, Physical approaches to biologically inspired problems

 

 

Publications

MOAG-4 promotes the aggregation of α-synuclein by competing with self-protective electrostatic interactions
Y Yoshimura, MA Holmberg, P Kukic, CB Andersen, A Mata-Cabana, SF Falsone, M Vendruscolo, EAA Nollen, FAA Mulder
– Journal of Biological Chemistry
(2017)
292,
8269
(DOI: 10.1074/jbc.m116.764886)
Structural Characterization of the Early Events in the Nucleation-Condensation Mechanism in a Protein Folding Process
P Kukic, Y Pustovalova, C Camilloni, S Gianni, DM Korzhnev, M Vendruscolo
– J Am Chem Soc
(2017)
139,
6899
(DOI: 10.1021/jacs.7b01540)
The rnf168 paralog rnf169 defines a new class of ubiquitylated histone reader involved in the response to dna damage
J Kitevski-LeBlanc, A Fradet-Turcotte, P Kukic, MD Wilson, G Portella, T Yuwen, S Panier, S Duan, MD Canny, H van Ingen, CH Arrowsmith, JL Rubinstein, M Vendruscolo, D Durocher, LE Kay
– eLife
(2017)
6,
e23872
(DOI: 10.7554/eLife.23872)
Simultaneous quantification of protein order and disorder
P Sormanni, D Piovesan, GT Heller, M Bonomi, P Kukic, C Camilloni, M Fuxreiter, Z Dosztanyi, RV Pappu, MM Babu, S Longhi, P Tompa, AK Dunker, VN Uversky, SCE Tosatto, M Vendruscolo
– Nat Chem Biol
(2017)
13,
339
(DOI: 10.1038/nchembio.2331)
Investigation of Ionization Pattern of the Adjacent Acidic Residues in the DXDXE Motif of GH-18 Chitinases Using Theoretical pK
P Meekrathok, P Kukic, JE Nielsen, W Suginta
– Journal of Chemical Information and Modeling
(2017)
57,
572
(DOI: 10.1021/acs.jcim.6b00536)
Molecular Dynamics Simulation of Tau Peptides for the Investigation of Conformational Changes Induced by Specific Phosphorylation Patterns
NS Gandhi, P Kukic, G Lippens, RL Mancera
– Methods in molecular biology (Clifton, N.J.)
(2016)
1523,
33
(DOI: 10.1007/978-1-4939-6598-4_3)
Structural characterization of the interaction of α-synuclein nascent chains with the ribosomal surface and trigger factor.
A Deckert, CA Waudby, T Wlodarski, AS Wentink, X Wang, JP Kirkpatrick, JFS Paton, C Camilloni, P Kukic, CM Dobson, M Vendruscolo, LD Cabrita, J Christodoulou
– Proceedings of the National Academy of Sciences of the United States of America
(2016)
113,
5012
(DOI: 10.1073/pnas.1519124113)
Structural Insights into the Calcium-Mediated Allosteric Transition in the C‑Terminal Domain of Calmodulin from Nuclear Magnetic Resonance Measurements
P Kukic, P Lundström, C Camilloni, J Evenäs, M Akke, M Vendruscolo
– Biochemistry
(2015)
55,
19
(DOI: 10.1021/acs.biochem.5b00961)
Mapping the Protein Fold Universe Using the CamTube Force Field in Molecular Dynamics Simulations
P Kukic, A Kannan, MJJ Dijkstra, S Abeln, C Camilloni, M Vendruscolo
– PLoS Computational Biology
(2015)
11,
e1004435
(DOI: 10.1371/journal.pcbi.1004435)
Probing the Residual Structure of the Low Populated Denatured State of ADA2h under Folding Conditions by Relaxation Dispersion Nuclear Magnetic Resonance Spectroscopy
Y Pustovalova, P Kukic, M Vendruscolo, DM Korzhnev
– Biochemistry
(2015)
54,
4611
(DOI: 10.1021/acs.biochem.5b00345)
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